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Master’s thesis on fundamental problems of technology (degree: M.Sc. Eng.): “Interpretation of the results of computer simulations of molecular dynamics in the AgJ crystal” (in Polish). Supervisor: prof. dr hab. inż. Jacek Mościński.
Institute of Computer Science, Faculty of Electrical and Control Engineering, AGH University of Science and Technology, Kraków 1986.
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Master’s thesis in physics (specialization: solid state physics): “Heavy fermions as strongly correlated narrow-band systems” (in Polish). Supervisor: Associate Professor Józef Spałek (in 2016, already a professor, he was awarded the Foundation for Polish Science Prize, the so-called Polish Nobel Prize).
Institute of Physics, Faculty of Physics and Mathematics, Jagiellonian University, Kraków 1987.
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Doctoral dissertation in the humanities (discipline: history, specialization: history of science (and philosophy of science)): “A critique of Kuhn’s interpretation of the Copernican revolution in the light of the hypothetico-deductive method of correspondence thinking” (in Polish). Supervisor: Rev. Prof. Dr. hab. Michał Heller (in 2008 he was awarded the Templeton Prize, called the religious Nobel Prize).
Institute for the History of Science, Polish Academy of Sciences, Warsaw 1997, 275 pp.
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Master’s thesis in the philosophy of science: “On the development of Popper’s philosophy of exact sciences. The archival method, the synthetic method, and the translation method.” Supervisor: Rev. Prof. Michał Heller (in 2008 he was awarded the Templeton Prize, known as the Nobel Prize for religion).
Faculty of Philosophy, Pontifical Academy of Theology, Kraków 1998, 181 pp.
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Thomas S. Kuhn (1922-1996) and the issue of the Copernican Revolution (in Polish; Studia Copernicana vol. 39, Warsaw: IHN PAN Publishing House, 2001).
ISBN 83-86062-02-9; pp. XV+397. Expanded and updated version of the doctoral dissertation.
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Ludwik Antoni Birkenmajer on the centenary of the publication of his work entitled Nicolaus Copernicus. Edited by Michał Kokowski (Kraków: Polish Academy of Learning, 2002).
Komisja Historii Nauki. Monografie. 5, 75 pp.
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Copernicus’s Originality. Towards Integration of Contemporary Copernican Studies (Warsaw–Cracow: Wydawnictwa IHN PAN, 2004).
Habilitation thesis in the humanities (discipline: history, specialization: history of science and history of exact sciences with philosophy of exact sciences). Habilitation colloquium: Institute of the History of Science, Polish Academy of Sciences, Warsaw, June 23, 2005.
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Online Book of Abstracts of the 2nd International Conference of the European Society for the History of Science. Edited (and typeset) by Michal Kokowski (Kraków: Polish Academy of Arts and Sciences, 2006).
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The Global and the Local: The History of Science and the Cultural Integration of Europe. Proceedings of the 2nd ICESHS (Cracow, Poland, September 6-9, 2006) [E-book (with the online and CD-ROM versions). Edited and typeset by Michal Kokowski (Cracow: The Press of of the Polish Academy of Arts and Sciences, 2007), 985 pp.
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The Different Faces of Nicolaus Copernicus. Meetings with the History of Interpretation (in Polish; Warsaw: Institute of the History of Science, Polish Academy of Sciences, Kraków: Polish Academy of Arts and Sciences, 2009).
ISBN 978-83-87992-67-5; pp. 676.